BtaEX6046772 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100629024-100639246:+
Coord C1 exon
chr11:100629024-100629146
Coord A exon
chr11:100638320-100638491
Coord C2 exon
chr11:100639140-100639246
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTCCTGCCCCCCAGGTG
3' ss Score
10.79
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGTCTTTGTGCTGACGGGGGACTGTGGTGACCGCACCCACCCTGGCTACCTGGCCTACGAGGAGATCGCCGCCACCAGCTCCGGGCAGGTGTTCCACCTGGACAAGCAGCAGGTGACCGAG
Seq A exon
GTGCTGAAGTGGGTGGAGTCAGCCCTCCAGGCCTCCAAGGTGCACCTGCTGTCCACGGACCATGAGGAGGGCGGCGAGCACACGTGGAAGATCCCCTTTGACCCCAGCCTGAAGGAGGTCACCATCTCCCTGAGTGGCCCAGGGCCCGAGATCGAAGTCCGAGACCCGCTGG
Seq C2 exon
GGAGGATCCTGCAGAGGGATGACGGCCTCAATGTGCTCCTCAGCATCCCTGACTCTGCCAAGGTCGTGGCCTTTAAGCCTGAGCATTCCGGGCTGTGGTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(23.3=100)
A:
PF135191=VWA_2=PD(2.3=6.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTTTGTGCTGACGGG
R:
CTTGATGGACCACAGCCCG
Band lengths:
230-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]