MmuEX6100409 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31336507-31344118:+
Coord C1 exon
chr2:31336507-31336629
Coord A exon
chr2:31343056-31343227
Coord C2 exon
chr2:31344012-31344118
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCATTTCTCCTCAGGTG
3' ss Score
11.81
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGTCTTTGTGCTGACTGGAGACTGTGGTGACCGCACCCATCCTGGCTACCTGGTCTTCGAGGAGATCGCCTCCACCAGTTCTGGCCAGGTGTTCCAGCTGGACAAACAGCAGGTGTCGGAG
Seq A exon
GTGTTAAAGTGGGTGGAGTCAGCAATCCAGGCCTCCAAAGTTCATCTGCTGTCTGCAGACCATGAGGAGGAGGGCGAGCACACGTGGAGAATCCCCTTTGACCCCAGCCTGAAGGAGGTCACCATTGCACTGAGCGGACCAGGGCCTGAGATTGAAGTCCGGGACCCACTGG
Seq C2 exon
GAAGGGTCCTGCAGACGGATGAAGGCCTCAATGTGCTCCTCAACATTCCAGACTCAGCCAAGGTCGTAGCCTTTAAGCCTGAGCACCCAGGACTGTGGGCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'1-18,'1-7,4-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(23.3=100)
A:
PF135191=VWA_2=PD(2.3=6.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTTTGTGCTGACTGGA
R:
CTTGATGGCCCACAGTCCTG
Band lengths:
230-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types