BtaEX6046775 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100603004-100628193:+
Coord C1 exon
chr11:100603004-100603259
Coord A exon
chr11:100626346-100626416
Coord C2 exon
chr11:100628035-100628193
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTCTTCCCTACAGATA
3' ss Score
13.13
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATGAGGCCCCGGGCGCCGCTCCTGCGGCTGCTGCTGGCTGTCTCCGCGGCCGCCGCGGCGGTGGTCGGCGAGCCCGGGACCGCGCTGCCCCCTACCACGGGGGGCGCCACCCTGGCCATCGTCTTCGACGTCACCGGTTCCATGTGGGACGACCTGATGCAGGTGATGGACGGCGCCTCGCGCATTCTGGAGCACAGTCTGAGCCGCGGCAGCCGGGTCATCGCCAACTACGCGCTGGTGCCCTTCCACGACCCAG
Seq A exon
ATATTGGCCCAGTGACCCTCACATCGGACCCAGCGGTGTTTCAGAGGGAGCTGAGAGAACTCTACGTGCAG
Seq C2 exon
GGAGGCGGGGACTGCCCAGAGATGAGCTTGGGGGCCATCAAGGCTGCCGTGGAGGTGGCCAACCCCGGCTCCTTCATCTACGTCTTCTCGGACGCCCGCGCCAAGGACTACCACAAGAAGGACGAGGTGCTGAGGCTCCTGCAGCTTAAACAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(28.5=57.0)
A:
PF135191=VWA_2=FE(13.4=100)
C2:
PF135191=VWA_2=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCAGGTGATGGACGG
R:
TAGATGAAGGAGCCGGGGTTG
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]