MmuEX0023007 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31314415-31335572:+
Coord C1 exon
chr2:31314415-31314676
Coord A exon
chr2:31333855-31333925
Coord C2 exon
chr2:31335414-31335572
Length
71 bp
Sequences
Splice sites
3' ss Seq
GCATCTCTCTCTTCCCACAGATA
3' ss Score
12.24
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGACGCCTGGGGCGCAGCTCCTGCCGCTGCTCGTGGCGATCTCTACAGCAGTGGCGGCGGTGGTCACGTCTGACGCGCCCACGAAGACGCTGTCCCCCGCCACAGGAGACGCCACCCTAGCCTTCGTCTTCGATGTCACCGGCTCCATGTGGGATGACCTGATGCAGGTGATCGACGGCGCCTCGCGCATTCTGGAGCGCAGCCTGAGCAGCCGCAGCCGGGTCATCGCCAACTATGCGCTGGTGCCTTTCCACGACCCAG
Seq A exon
ATATTGGCCCGGTGACCCTCACGGCAGACCCAGTGGTATTTCAGAGAGAGCTGAGAGAACTCTATGTTCAG
Seq C2 exon
GGAGGAGGTGATTGCCCAGAGATGAGTGTGGGGGCCATCAAGGCTGCCGTGGAGGTCGCCAACCCAGGCTCCTTCATCTACGTCTTCTCGGATGCCCGTGCCAAGGACTACCACAAGAAGAAGGAGCTTCTGCAGCTCCTGCAGCTGAAGCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(28.5=55.7)
A:
PF135191=VWA_2=FE(13.4=100)
C2:
PF135191=VWA_2=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTAGCCTTCGTCTTCGAT
R:
TCTCTGGGCAATCACCTCCTC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types