BtaEX6046974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018710 | TTF1
Description
Bos taurus transcription termination factor, RNA polymerase I (TTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102083]
Coordinates
chr11:102492222-102497124:-
Coord C1 exon
chr11:102496890-102497124
Coord A exon
chr11:102493466-102493555
Coord C2 exon
chr11:102492222-102492287
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTCTGTTAACACAGGAC
3' ss Score
6.46
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AAATTAATCATGGTGCCTGGAGCAAGACGGAAACCCAGAAACTAATCAAGGCTGTTGAAGAAGTGATTCTGAAGAAAATGTCTCCCCAGGAGCTAAACGAGATGGATTCTAAACTGCAGCTGAACCCTGAAGGCCGCCTGTCGATTGTTCGGGAGAAGCTCTACAAAGGCATATCCTGGGTAGAAGTGGAGGCTAGAGTGGAAACCAGGAATTGGATGCAGTGTAAAAGTAAGTG
Seq A exon
GACGGAAATTCTAACCAAGAGGATGACGAATGGTCGGGACGTGTACCGAGGAGTGAACGCTCTGCAGGCCAAGATCAATCTGATTGAAAG
Seq C2 exon
GTTGTACGAAATAAATGTGCAAGATGTTAATGAAATAGACTGGGAAGATCTTGCTAGCATCATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018710-'16-15,'16-14,18-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAGCTGAACCCTGAAG
R:
TGCTAGCAAGATCTTCCCAGTCT
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]