GgaEX1061100 @ galGal4
Exon Skipping
Gene
ENSGALG00000027242 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr17:6522063-6523407:-
Coord C1 exon
chr17:6523206-6523407
Coord A exon
chr17:6522900-6522989
Coord C2 exon
chr17:6522063-6522148
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGTGTGTTTTAAAGGAC
3' ss Score
10.45
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
CAATTAATTATGGTCCTTGGTCAAAAGAAGAGATCCAAAGGTTGATGCGTGCAGTGGAGGAAGTGATTATAAAAAGAACAAAACTGGAAAATGCAAATTCTCTTTCCTCATCCAAAAAATCTCATAGAAGTCTCCAGATTGACCGTGAGAAACTTTTCCAGAAATTACCATGGACTGAGATTGAAACTAAAGTGGGCACTAG
Seq A exon
GACTTCAATTTTAACCAACAAGATTACCAAAGGGCAGCAGTTACACAGGGGAACCAAAGGATTGCAAGCCAGCATCAACCTTATTAAAAG
Seq C2 exon
AGACGTTCCTGGAAGCTACGTTCAAGCAAAATTCTACAAGCTAAAAGTCACCTATGTTCCTTTTTGGCGAGCTAAGACTTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027242_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(24.1=18.2),PF131691=Poxvirus_B22R_N=PU(78.4=75.3)
A:
PF131691=Poxvirus_B22R_N=PD(20.3=48.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCAGTGGAGGAAGTGATT
R:
ACGTAGCTTCCAGGAACGTCT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]