RnoEX0094909 @ rn6
Exon Skipping
Gene
ENSRNOG00000039777 | Ttf1
Description
transcription termination factor 1 [Source:RGD Symbol;Acc:1565673]
Coordinates
chr3:7648675-7654401:+
Coord C1 exon
chr3:7648675-7648909
Coord A exon
chr3:7652658-7652747
Coord C2 exon
chr3:7654336-7654401
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTTTTTTTTAATAGGAC
3' ss Score
10.18
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATAGAAACCATGGCACTTGGAGTAAGGCAGAAACTCAGAGGCTGATCAAGGCTGTGGAGGATGTGATTCTAAAGAAGATGTCTTCCCAAGAATTAAGAGAACTAGATTCTAGACTCCAGGAAGACCCTGAAGGTCGCCTGTCGATTGTCCGGGAAAAACTCTATAAGGGCATATCATGGGTGGAGGTGGAAGCTAGAGTGGAGACCCGGAACTGGATGCAGTGCAAAAGTAAGTG
Seq A exon
GACAGAGATTCTTACCAAAAGGATGACCCATGGTGGGTTCGTGTATCGTGGGGTCAAGGCTCTACAGGCCAAAATAACTCTTATTGAAAG
Seq C2 exon
GCTGTATGAATTAAATGTGAATGATGCTAATGAAATAGATTGGGAAGATCTTGCTGGTGCCATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039777_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGGTCGCCTGTCGA
R:
GCACCAGCAAGATCTTCCCAA
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]