RnoALTD0032302-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000039777 | Ttf1
Description
transcription termination factor 1 [Source:RGD Symbol;Acc:1565673]
Coordinates
chr3:7648679-7652747:+
Coord C1 exon
chr3:7648679-7648902
Coord A exon
chr3:7648903-7648909
Coord C2 exon
chr3:7652658-7652747
Length
7 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCTTTTCTTTTTTTTAATAGGAC
3' ss Score
10.18
Exon sequences
Seq C1 exon
AAACCATGGCACTTGGAGTAAGGCAGAAACTCAGAGGCTGATCAAGGCTGTGGAGGATGTGATTCTAAAGAAGATGTCTTCCCAAGAATTAAGAGAACTAGATTCTAGACTCCAGGAAGACCCTGAAGGTCGCCTGTCGATTGTCCGGGAAAAACTCTATAAGGGCATATCATGGGTGGAGGTGGAAGCTAGAGTGGAGACCCGGAACTGGATGCAGTGCAAAA
Seq A exon
GTAAGTG
Seq C2 exon
GACAGAGATTCTTACCAAAAGGATGACCCATGGTGGGTTCGTGTATCGTGGGGTCAAGGCTCTACAGGCCAAAATAACTCTTATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039777-12-9,13-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGGTGGAAGCTAGAGT
R:
CGATACACGAACCCACCATGG
Band lengths:
98-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]