HsaALTD1017037-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000125482 | TTF1
Description
transcription termination factor 1 [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr9:132388139-132390831:-
Coord C1 exon
chr9:132390604-132390831
Coord A exon
chr9:132390597-132390603
Coord C2 exon
chr9:132388139-132388228
Length
7 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTTCTTCCTTTTAATGTAGGAC
3' ss Score
10.07
Exon sequences
Seq C1 exon
AAAGAAATCGTGGTGCTTGGAGTAAGTCTGAAACCCGGAAACTAATCAAGGCTGTCGAAGAAGTGATTCTGAAGAAGATGTCTCCCCAGGAGTTAAAAGAGGTGGATTCCAAACTCCAAGAAAATCCTGAAAGTTGCCTATCAATTGTTCGGGAAAAACTCTACAAGGGCATATCTTGGGTAGAAGTAGAAGCTAAAGTGCAAACCAGAAATTGGATGCAGTGTAAAA
Seq A exon
GTAAGTG
Seq C2 exon
GACAGAAATTCTAACCAAGAGGATGACTAATGGTCGGCGTATCTACTATGGCATGAATGCCCTGCGGGCCAAGGTCAGCCTTATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125482-23-13,24-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGGCATATCTTGGGTAGA
R:
ACGCCGACCATTAGTCATCCT
Band lengths:
106-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains