GgaALTD1024504-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000027242 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr17:6522900-6523407:-
Coord C1 exon
chr17:6523206-6523407
Coord A exon
chr17:6523179-6523205
Coord C2 exon
chr17:6522900-6522989
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CTTTTTTGTGTGTTTTAAAGGAC
3' ss Score
10.45
Exon sequences
Seq C1 exon
CAATTAATTATGGTCCTTGGTCAAAAGAAGAGATCCAAAGGTTGATGCGTGCAGTGGAGGAAGTGATTATAAAAAGAACAAAACTGGAAAATGCAAATTCTCTTTCCTCATCCAAAAAATCTCATAGAAGTCTCCAGATTGACCGTGAGAAACTTTTCCAGAAATTACCATGGACTGAGATTGAAACTAAAGTGGGCACTAG
Seq A exon
GTATTGGAGACAATGTAAGCAGAAATG
Seq C2 exon
GACTTCAATTTTAACCAACAAGATTACCAAAGGGCAGCAGTTACACAGGGGAACCAAAGGATTGCAAGCCAGCATCAACCTTATTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027242-7-7,8-7,9-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(24.1=18.2),PF131691=Poxvirus_B22R_N=PU(78.4=75.3)
A:
NA
C2:
PF131691=Poxvirus_B22R_N=PD(20.3=48.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCAGATTGACCGTGAGA
R:
TGTGTAACTGCTGCCCTTTGG
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]