BtaEX6047007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102990340-102994430:-
Coord C1 exon
chr11:102994278-102994430
Coord A exon
chr11:102991990-102992134
Coord C2 exon
chr11:102990340-102990494
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTTCCCTCCTACAGATG
3' ss Score
12.88
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CACCTCTTGGACAAAATGAATGAATACGTGGGCAAGGCCGCCTCTCGGTTATCCGCCCTCTTGCTACTGGGCCACGTCGTGAGGCTGCAGCCGTCATGGAAGCATAAGCTCTCTCAAGCACCTCTTTTGCCTTCTCTACTAAAATGTCTCAAG
Seq A exon
ATGGACACCGACGTCATTGTCCTCACAACAGGAGTCTTAGTGTTGATAACCATGCTCCCAATGATTCCGCAGTCGGGGAAACAGCACCTTCATGATTTCTTTGATATCTTTGGCCGTCTTTCGTCATGGTGCCTGAAGAAACCAG
Seq C2 exon
GCCATGTGACAGAAGTCTATCTCGTCCACCTCCACGCCAGCGTCTACGCTCTCTTCCATCGCCTGTATGGGATGTACCCTTGCAACTTTGTCTCCTTTCTGCGTTCTCACTACAGTATGAAGGAAAACCTGGAGACTTTTGAAGAAGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-'5-10,'5-7,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(38.5=100)
A:
PF043887=Hamartin=FE(6.7=100)
C2:
PF043887=Hamartin=FE(7.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGAATACGTGGGCAAGGC
R:
GTGAGAACGCAGAAAGGAGACA
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]