GgaEX0004582 @ galGal3
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
NA
Coordinates
chr17:7389879-7392647:-
Coord C1 exon
chr17:7392495-7392647
Coord A exon
chr17:7391059-7391203
Coord C2 exon
chr17:7389879-7390033
Length
145 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTCCCTTCTTGCAGACT
3' ss Score
10.24
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACCTTCTGGACAAAATTAATGAATATATGGGCAAAGCTGCTACTCGTTTACCCACTCTCTCGCTGCTGGGACATGTGATAAGGCGACAACCATCGTGGAAACATAAGCTTTCTCAAGCACCTCTCCTACTTTCATTACTTAAATGTCTCAAG
Seq A exon
ACTGACACAGATGTAGTAGTACTCACCACAGGTGTCCTAGTGCTAATAACCATGTTGCCAATGATTCCTCAGTCTGGCAAACAGTACCTCCATGATTTCTTTGGTATCTTTGGGCGTCTCTCAGCCTGGTGCTTGCAGAATCCAG
Seq C2 exon
GTCACGTGGCAGAGATTTACCTTGTCCATCTTCATGCCAGTGTTTATGCTCTCTTTCATCGGCTTTATGGAATGTATCCTTGCAATTTTGTCTCCTTTCTGCGTTCTCACTACAGTATGAAGGAAAACTTGGAGACCTTTGAAGAGGTAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(10.9=100)
A:
PF043887=Hamartin=FE(10.5=100)
C2:
PF043887=Hamartin=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACCCACTCTCTCGCTGC
R:
CCTCTTCAAAGGTCTCCAAGT
Band lengths:
254-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]