BtaEX6047121 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103759320-103769889:-
Coord C1 exon
chr11:103769601-103769889
Coord A exon
chr11:103760749-103760849
Coord C2 exon
chr11:103759320-103759368
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTCTTGCTCCTGCTTTTCAGACT
3' ss Score
8.58
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCTCCGGCGGCGGCGGCGGCGGCCCGAACCCGGCGCCCGCCCTCGGCGCGGCCCGCGAGGCTGCCCCCGCTGCTCGTGCTGCTGGCGGCGGCGGCAGGGCCGGGCGCGGGCGGCGCGGCGCGGCAGTACCGCGCGGGCGAGGACGCCGTGTGGGTGCTGGACAGCGGCAGCGTGCGCGGGGCCACCGCCAACAGCTCGGCCGCGTGGCTCGTGCAGTTCTACTCCTCGTGGTGCGGCCACTGCATCGGCTACGCGCCCACCTGGCGGGCCCTGGCCGCAGACGTGAGAG
Seq A exon
ACTGGGCGGCTGCCATCCGCGTCGCCGCCCTGGACTGTGCGGAGGAGAAGAACCAGGAGGTGTGCCGCGCCTACGACATCCACTTCTACCCCACCTTCCGG
Seq C2 exon
TATTTTAAAGCGTTTACAAAGGACTTCACAACTGGAGAAAACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'1-4,'1-2,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PU(43.2=49.5)
A:
PF0008515=Thioredoxin=FE(29.7=100)
C2:
PF0008515=Thioredoxin=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGGTGCTGGACAG
R:
AGTTTTCTCCAGTTGTGAAGTCCT
Band lengths:
186-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]