HsaEX6063977 @ hg19
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139116707-139137687:-
Coord C1 exon
chr9:139137322-139137687
Coord A exon
chr9:139118620-139118720
Coord C2 exon
chr9:139116707-139116755
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTCATGCTCCTGCTTTTCAGACT
3' ss Score
7.78
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CCAGGGTGAAAGTTCAGCGCGCCGGCGGCACTTCCAACATGGCGGCGGCCGGGGCGGCGGTGGCGCGCAGCCCGGGAATCGGAGCGGGACCTGCGCTGAGAGCCCGGCGCTCGCCCCCGCCGCGGGCCGCACGGCTGCCGCGGCTGCTAGTGCTGCTAGCGGCGGCGGCGGTGGGGCCGGGCGCGGGCGGTGCGGCGCGGCTGTACCGCGCGGGCGAGGACGCCGTGTGGGTGCTGGACAGCGGCAGCGTGCGCGGGGCCACCGCCAACAGCTCGGCCGCGTGGCTCGTGCAGTTCTACTCGTCGTGGTGTGGCCACTGCATCGGCTACGCGCCCACTTGGCGGGCCCTGGCTGGGGATGTGCGAG
Seq A exon
ACTGGGCCAGTGCCATTCGCGTCGCAGCTCTGGACTGCATGGAAGAGAAGAACCAGGCCGTGTGCCATGACTACGACATCCACTTCTACCCCACCTTCCGG
Seq C2 exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.011 C2=0.113
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PU(43.2=43.6)
A:
PF0008515=Thioredoxin=FE(29.7=100)
C2:
PF0008515=Thioredoxin=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGGTGCTGGACAG
R:
AATTTTCTCCAGTTGTAAACTCCTT
Band lengths:
186-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)