GgaEX1047584 @ galGal3
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8710843-8715136:+
Coord C1 exon
chr17:8710843-8711104
Coord A exon
chr17:8714767-8714867
Coord C2 exon
chr17:8715088-8715136
Length
101 bp
Sequences
Splice sites
3' ss Seq
AAGTATGTTTTTGTTTTCAGACT
3' ss Score
7.54
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CGCCCCGCCCCGCGCGGCCGGCGTCCCAACATGGCGGCGGGCGGCGGCGGGCCGCTGGTATTGCTGACGCTGCTGGTGGCGGGGGTGGCGGCGCGGCTGTACCGGGCCGGGGAGGACCCGCTGAGCGTGCTGGCGGCCGGCACGGTGCGGCGGGCGCTGCTCAACTCCTCGGCCGCGTGGGTGGTGCAGTTCTACAGCTCGTCCTGCGGACACTGCGTCGCCTTCGCCCCCACCTGGCGGGCCCTGGCGGGGGACGTCAAAG
Seq A exon
ACTGGGAGTCTGCAATTAGAGTTGGTGTGCTGGACTGTGGGGAAGAAGAGAACTATGAGACGTGTAAGGAGTATGGGATCCACTTCTATCCAACTTTTAGG
Seq C2 exon
TTCTTCAAAGCGTTTACAAAGCAGTTTACAACTGGAGAAAATTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PU(42.0=53.4)
A:
PF0008515=Thioredoxin=FE(29.5=100)
C2:
PF0008515=Thioredoxin=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGTATTGCTGACGCTG
R:
AGTTGTAAACTGCTTTGTAAACGCT
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]