BtaEX6047181 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000001352 | SDCCAG3

Description

Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]

Coordinates

chr11:103914043-103914762:-

Coord C1 exon

chr11:103914650-103914762

Coord A exon

chr11:103914134-103914451

Coord C2 exon

chr11:103914043-103914132

Length

318 bp

Sequences

Splice sites

3' ss Seq

CACTTCCCCGCCTTCTCTAGGAA

3' ss Score

9.99

5' ss Seq

TCCCCCGAC

5' ss Score

-41.2

Exon sequences

Seq C1 exon

ATGATAAACTTGGAGATCTGGAAGCGGCAAACCCGTTCTCCTTTAAAGAGTTTTTGAAGACCAAGAACCTGAGCCTGTCGAAAGAGGACACCGACAGCAGAGTTTACTCACAG

Seq A exon

GAAGCCACGAGGCACTCGCTGGGACTCGACCGCACCTCCCCAGCTTCCCAGACTGTGGGCTATGGCCTGGAATATCAGCAGCCATTTTTTGAAGACCCAACGGGGGCTGGCGACCTCCTGGACGAGGATGAGGATGAGGAGGACGGGTGGAACGGGGCCTACCTGCCGTCCGCCATGGAGCAGACGCACTCCTCCAGGGTGGCCGCCAGCACGTCGCCCTGCAGCACGTACGTCTCCTTTTTCTCCAACCCGTCGGAGCTGGTGGGGCCCGAGTCTCTGCCCCCATGGACGCTGAGCGACTCCGACTCTCGCATCTCC

Seq C2 exon

CCGACGGGGAGCCCCAGCGCTGACTTCACAGCCCACGGAGAGAGTCTGGGGGACAGGCACCTTCGGACACTGCAGATAAGTTACGAAGCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000001352-'9-5,'9-4,10-5=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.329 A=0.731 C2=0.533

Domain overlap (PFAM):

C1:

NO

A:

PF130941=CENP-Q=PU(6.4=12.3)

C2:

PF041569=IncA=FE(18.0=100),PF079026=Gp58=PU(16.2=93.3),PF131661=AAA_13=PU(13.1=63.3),PF0076914=ERM=PU(10.6=56.7),PF057016=WEMBL=PU(10.1=50.0),PF0026115=Tropomyosin=PU(10.3=40.0),PF149321=HAUS-augmin3=PU(8.1=40.0)

Main Inclusion Isoform:

ENSBTAP00000049441