MmuEX0041370 @ mm10
Exon Skipping
Gene
ENSMUSG00000026927 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
Coordinates
chr2:26386753-26387671:-
Coord C1 exon
chr2:26387556-26387671
Coord A exon
chr2:26387198-26387311
Coord C2 exon
chr2:26386753-26387089
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCACTGTTTTTAGGAA
3' ss Score
10.36
5' ss Seq
AACCTAGAG
5' ss Score
-15.98
Exon sequences
Seq C1 exon
GTGACAAACTTGAAGACCTTGAAGAAGCCAATCCATTCTCCTTCAAAGAGTTTTTGAAAACCAAGAACCTCAGCCTGTCAAAAGAAGACACGACCACCAGCCGAATTTACCCAAAG
Seq A exon
GAAGCCTCAAGGCACCCACTGGGACTAGAGCACAGCTCCCCTGCCTCCCAGCTCATGGGATATGGCCTGGAATCTCAGCAGCCATTTTTTGAAGACCCAACAAGAGCCAGCAAC
Seq C2 exon
CTTTCCTTTTTCTCCAACTCGTCAGAGCTGGCATGTCCCGAGTCTTTGCCCCCATGGACGCTGAGTGACACCGACTCCAGGATCTCCCCAGCGTCTCCAGCTGGGAGTCCTAATGCAGACTTTGCAGCTCATGAAGAATCCCTAGGGGACAGACACCTGCGGACGCTGCAGATAAGTTATGAAGCAGTAAGTGAGGGCAGTGTGGCACCCAACACAGCTGAGCTGTGTTGTGGAGAGGAGCTGCAGTCATCTACTTCCTGGGTGGCCTGGGCTCAATGCCACGGACAAGGCAGTTAGTCATATAATGGCTTGATGTAGAATTGCCCTGAAGAGGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026927_MULTIEX1-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.811 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0026115=Tropomyosin=PU(12.9=17.6),PF131661=AAA_13=PU(16.7=14.7),PF0076914=ERM=PU(10.6=14.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGACACGACCACCAGC
R:
GCCACACTGCCCTCACTTAC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types