DreEX6013259 @ danRer10
Exon Skipping
Gene
ENSDARG00000095515 | sdccag3
Description
serologically defined colon cancer antigen 3 [Source:ZFIN;Acc:ZDB-GENE-060526-242]
Coordinates
chr5:50556521-50562027:-
Coord C1 exon
chr5:50561936-50562027
Coord A exon
chr5:50558619-50559023
Coord C2 exon
chr5:50556521-50556594
Length
405 bp
Sequences
Splice sites
3' ss Seq
AATGTTCGATTTCCCCATAGGTG
3' ss Score
10.86
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGAGCCAAAGCAAGATGAGCTGAATCCATTTTCGTTCAAGGAGTTTATCCGAAACAAAAACCAGCCGTCATGTTCCACAGAAGCCACAGAG
Seq A exon
GTGTACAATGGTGCATGCCTAGTCGAGCAGGACTATAACACCTCTATAGACTTTGCTACCAAGGGTCCTTTTTTCACTGATCCCTCTGCACTCTGTCAGCCTCCTGAAAGTGAACCCGACGAGACATGGATTGAAAGCCACCAACGGTCAGCCATTGAAGGTTCTCCTGACTTTGAACTATGTGGGGCATCAGACATCAGTGCTTACTCTGAGCAGTCATCTCTGTGCAGTGATGAGAGAGAAGCGGCTGAATGGGAACTGGGTCAGTCTGACTTCCTGCCAAAAAAGCACTTATCCAGAATCAGCACTGGAAGCTATGAGGGGGATGAAGAGACTTCAGTGATTGATATTTCCTTCCATCATAAGAGAGGCAATGCTGAAAATGGCACAAAGAATCTCCAGCAG
Seq C2 exon
CTCAGAGAAGAAAATTCCCTTCTCAGAAAGCAAGTCAAAGAGCTAGTTAGAATGTCGGAAACTGACTCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095515-'2-5,'2-2,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.459 C2=0.560
Domain overlap (PFAM):
C1:
NO
A:
PF154191=LNP1=PU(19.9=20.7),PF149921=TMCO5=PU(16.3=17.8),PF087025=Fib_alpha=PU(16.8=16.3),PF057016=WEMBL=PU(12.3=13.3)
C2:
PF154191=LNP1=FE(17.0=100),PF149921=TMCO5=FE(16.3=100),PF087025=Fib_alpha=FE(18.3=100),PF057016=WEMBL=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]