BtaEX6047290 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104355416-104357119:+
Coord C1 exon
chr11:104355416-104355556
Coord A exon
chr11:104356313-104356441
Coord C2 exon
chr11:104356991-104357119
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTCCAGGGCCCACCCACAGGAC
3' ss Score
4.36
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CACTGGCCCAGGACCCGGCGGCCACAGTGGCGGACACCGGCACCATCGCCGCTGTGCTGCTGAGCATCCTGCAGAGCCACCCCGCGGAGGAGCAGCTCCTGGCCATGGTCTACAGCCTGCTTACCATCGTGGCCAGCCAAG
Seq A exon
GACTGGCCACAGACGAGCTGCAGAGGGCCTGGCTGTTTGAGGACATCCTGAAGCGCCTGGACAGCCTCCCCAGGAGCAGGGACATCTGTATCCACGGCCTGAGCCTGCTCTGGGCCCTGCTGGTGGATG
Seq C2 exon
CTATCATTGTGAACAAGGCCCCCTTGGAGAGAGCCCCGGCTCTCGTCACCGAGATACTGGTCACGTTCCCCAGGGACGCGGAGGTGGCTGAAGCTGGCTGTGCGGTTCTGTGGCTGCTGTCCTTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAGCATCCTGCAG
R:
CAAGGACAGCAGCCACAGAAC
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]