RnoEX0087051 @ rn6
Exon Skipping
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5496886-5498572:+
Coord C1 exon
chr3:5496886-5497026
Coord A exon
chr3:5497401-5497529
Coord C2 exon
chr3:5498444-5498572
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTGCTATGGCTGCTCACAGGAC
3' ss Score
5.04
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CACTGGCGCATGACTCAGAAGCTGAGATCCCGAAGAGCAGCTTGATCACCTCCTTCCTGATGAATGCCTTGCAGAGCCACCCTAACTCTGAAGGCCTTGTTCTTGTGACCTACAATGTGCTCAGCATCATCTCTAGCCAAG
Seq A exon
GACAGATCTCAGAGGAGCTAGAAGAGAAGAGATTGTTTGAGCTTGCCCAAAAGCACCTGGAGCGCTTCCAAGAGGACAGGGACATCTGCCTCGGTATCCTGAGCCTGCTCTGGTCCCTCCTGGTAGATG
Seq C2 exon
GCTGCATAAAGGAGGGTCAGTTTGAGCAGGTGGTCGTGCTGCTGCTGAGAAGCATCCAGCTATGTCCTGGCAGAGTACTTCTGGTGAACAATGCACTCCGCGGCTTGGCCAGCCTCGCAAAGGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911_MULTIEX2-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCGCATGACTCAGAAG
R:
GCGGAGTGCATTGTTCACCAG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]