BtaEX6047312 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104397526-104399491:+
Coord C1 exon
chr11:104397526-104397646
Coord A exon
chr11:104399067-104399196
Coord C2 exon
chr11:104399312-104399491
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCTTCCTCCCCGCAGGCC
3' ss Score
14.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGGACGTCCGGCCCCCGGGGCGGGAGGCTGCGTCCCCAGCGGGCGGCCCCGGGCTGGAGGCACTTGCCGCGCACGTGTGGACACCCCTGGCGGGGCCCTGCTCTGTCTCCTGTGGTCAAG
Seq A exon
GCCTGGTGGAACTGCGTTTTGTGTGCATGGACACTGCCCTCAGGACACCCGTCCGGGAAGAGCTGTGTGACCTGGCAAGCAAGCCCGGGAGCCGGCGGGAGGCCTGCCAGGCTGCCCCGTGCCCGGCCAG
Seq C2 exon
GTGGGAGACCCGAGCCTTGGCACCGTGCCCGGTGACCTGTGGAGGCGGGCAGGTGCCACTGGCTGTTCGCTGTGTGAGGATGGACCAAGGCCGCCTCGTCTCCCTGCCTCACTCCAAGTGCTGGCCCATGCCCCGGCCTAGGACCCTGGAGGACTGCAGCCTGGAGCCCTGCCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'25-32,'25-31,26-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGGACACCCCTGG
R:
CAGGGCTCCAGGCTGCAG
Band lengths:
219-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]