DreEX6051442 @ danRer10
Exon Skipping
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45238749-45239337:-
Coord C1 exon
chr8:45239232-45239337
Coord A exon
chr8:45239011-45239140
Coord C2 exon
chr8:45238749-45238937
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTGCATATATGCAGGAT
3' ss Score
6.24
5' ss Seq
TATGTAAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
ACCCAGCTGATCCATAGAGCTTCTCATGGAATGGTTCGCTCCAAAATTGTTCCAGTTTACGTTTGGAGTCCCAGGACAGGCGAGTGCTCCAAGACTTGTGGAAATG
Seq A exon
GATCTCAGCAGGTTCAGTTCTCTTGTGTTGATCACAAATCACGTCTGGAAGTCCCAGAGACCCTTTGTGATCCAACCACCAAACCAGCACAGGACACTCAACCTTGTCGCATATCACTATGCCTCCCTAT
Seq C2 exon
CTGGCGCTACATACAGGGGCCATGCAGTGTGTCTTGTGGAGGTGGAATAGCAAAGAGAGTCCTGTTTTGTTCACAGAGGATGGAGGAAAATGATGGAAACAATGATCTAGTGGTGGGAGAAACTGCTTGTGATTCTGTGCCCAAACCTCCAGAGGTAGTGGAATGTAATACTGAAAAATGTAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCTGATCCATAGAGCT
R:
TGGGCACAGAATCACAAGCAG
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]