MmuEX0003820 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26993907-26996914:+
Coord C1 exon
chr2:26993907-26994030
Coord A exon
chr2:26996523-26996652
Coord C2 exon
chr2:26996735-26996914
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCTTCTTCCTGGCAGGTC
3' ss Score
11.42
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTGGACAACACCATGTCTCTGGGAGAGGAGGCTCCATCCCCGGTGGGCAGTGACAAGCCAGGGGCTCAGGCTGAGCATGTGTGGACCCCTCTGGTGGGGCTGTGCTCCATCTCTTGTGGGAGAG
Seq A exon
GTCTGAAGGAACTGTATTTCCTGTGCATGGATTCTGTCCTCAAAATGCCTGTCCAGGAAGAGCTATGCGGCTTGGCTAGTAAGCCCCCAAGCCGGTGGGAGGTCTGCAGGGCTCGCCCCTGTCCTGCTCG
Seq C2 exon
GTGGGAGACTCAAGTCTTGGCACCGTGCCCGGTGACCTGTGGTGGGGGGCGAGTGCCACTGTCTGTTCGTTGTGTGCAGCTAGACCGTGGCCACCCGATATCTGTACCTCACTCCAAGTGCTCGCCAGTGCCTAAGCCAGGCTCCTTCGAGGACTGCAGCCCTGAGCCTTGTCCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCTCTGGGAGAGGAGG
R:
CTTAGGCACTGGCGAGCACTT
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types