BtaEX6047351 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104475276-104477621:+
Coord C1 exon
chr11:104475276-104475415
Coord A exon
chr11:104476319-104476394
Coord C2 exon
chr11:104477519-104477621
Length
76 bp
Sequences
Splice sites
3' ss Seq
AGCCCGGGTCCTCCCTCCAGGAA
3' ss Score
9.33
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACAGCCCAACGTCCAACAACCTGGAGGTGGGCCCCAACACCACCGCCTACTGGTGGGGAGAGTGGACCAAATGGACGGCGTGTTCCCGCAGCTGCGGGGCTGGGGTGACGTCCCAGGAGCGGCACTGCCTACAGCAGAG
Seq A exon
GAAGACGTCCGTCACAGGTGCCGGGAACCGGACCTGCACGGGCACGTCCAAGAGGTACCAGCTATGCAGAGTGCAG
Seq C2 exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCATCTCCTTCAACTCCCGCGTGTACAACGGGCGCAGGCACCAGTGGAAGCCACTCTATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=57.4)
A:
PF0009014=TSP_1=FE(45.5=100)
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGTCCAACAACCTGGAG
R:
AGGAGATGCACTGCTCCTCG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]