RnoEX0006913 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5627099-5628863:+
Coord C1 exon
chr3:5627099-5627241
Coord A exon
chr3:5627903-5627978
Coord C2 exon
chr3:5628761-5628863
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTACCACATTTTCCCGCCAGGAG
3' ss Score
7.89
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACAATAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGATGCCACTGCCTACTGGTGGGGAGAGTGGACCAAGTGGACTGCGTGTTCCCGCAGCTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTGCAACAGAG
Seq A exon
GAGGAAGTCTGTTCCAGGTGCAGGGAACAGGACCTGTGTGGGCACATCCAAACGGTACCAGCTCTGCAGAGTGCAG
Seq C2 exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAACAGTGTGTCTCCTTCAACTCCCGTGTGTATGACGGCCGGGCGTACCAGTGGAAGCCCCTTTACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=56.2)
A:
PF0009014=TSP_1=FE(45.5=100)
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGCCCCACATCCAACAGC
R:
GTTCTTCACGGAAGCTCCTCC
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]