MmuEX6099839 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27082382-27084098:+
Coord C1 exon
chr2:27082382-27082524
Coord A exon
chr2:27083200-27083275
Coord C2 exon
chr2:27083996-27084098
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTACCACATTTTCCCACCAGGAG
3' ss Score
8.48
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACAACAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGACACCACTGCCTACTGGTGGGGGGAGTGGACCAAGTGGACAGCATGTTCCCGCAGTTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTTCAACAGAG
Seq A exon
GAGGAAGTCTGTTCCAGGCACAGGGAACAGGACCTGTGTGGGCACGTCCAAACGGTACCAGCTCTGCAGAGTGCAG
Seq C2 exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAGCAGTGTGTCTCCTTCAACTCCCGTGTGTATGACGGCCGGGCGTACCAGTGGAAGCCCCTTTACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'2-13,'2-5,7-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=56.2)
A:
PF0009014=TSP_1=FE(45.5=100)
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAACAGCCTAGAGGGAGG
R:
GAGACACACTGCTCTTCACGG
Band lengths:
176-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types