BtaEX6047516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105846601-105847589:-
Coord C1 exon
chr11:105847477-105847589
Coord A exon
chr11:105846842-105846944
Coord C2 exon
chr11:105846601-105846696
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTGGGGCGTGTCATCACAGGGA
3' ss Score
2.56
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTCACCTGGTGCCTGGACGCTTGCATCCGAGAGCGGTTTGTGGACAGCAAGAGGGCCCGCGAGCTGCAGGGCTTCCTTGACGGAGTGAAGAAGGGGCAGGAGCAAGTTCTGGG
Seq A exon
GGACCTATCCATGATCCTGTGTGACCCCTTCGCCATCAACACCCTGTCTCTGAGCACCGTCAGGCACCTGCAGGAGCTGGTGGGCCAGGAGGTGCTACCCAGG
Seq C2 exon
GACAGCCCGGACCTCCTCCTGCTGCTCCGGCTGCTGGCGCTGGGCCAGGGTGCGTGGGACATGATCGACAGCCAGGTCTTCAAGGAGCCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861-'6-10,'6-9,7-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.8=100)
A:
PF062098=COBRA1=FE(7.2=100)
C2:
PF062098=COBRA1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCCTGGACGCTTG
R:
TCTTGGGCTCCTTGAAGACCT
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]