MmuEX0012055 @ mm9
Exon Skipping
Gene
ENSMUSG00000013465 | Cobra1
Description
cofactor of BRCA1 [Source:MGI Symbol;Acc:MGI:1931035]
Coordinates
chr2:25059407-25061865:-
Coord C1 exon
chr2:25061680-25061865
Coord A exon
chr2:25059718-25059820
Coord C2 exon
chr2:25059407-25059502
Length
103 bp
Sequences
Splice sites
3' ss Seq
CAAGGTCTGATTCCTTCCAGGGA
3' ss Score
6.87
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGGTGCAGAAGCTGACGCAGATGGTAGGGAAGAATGTGAAGCTGTACGACATGGTGCTGCAGTTCCTGCGCACACTGTTCCTGCGGACCAGGAATGTGCACTACTGCACGTTACGAGCTGAGCTGCTCATGTCTTTGCATGACTTGGACGTCAGTGACATCTGCACTGTGGATCCCTGCCATAAG
Seq A exon
GGATTTGTCTATGATCCTGTGCGACCCCTTTGCCATCAACACACTGTCCCTGAGCACCATCAGGCACTTGCAGGAGCTGGTTAGCCAGGAGACACTGCCCAGG
Seq C2 exon
GATAGTCCCGACCTCCTCCTACTACTTAGGCTGCTGGCACTGGGCCAAGGTGCATGGGACTTAATAGATAGCCAGGTCTTCAAGGAGCCTAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013465_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=PD(10.5=3.2),PF062098=COBRA1=FE(37.3=100)
A:
PF062098=COBRA1=FE(20.5=100),PF075846=BatA=PU(58.1=71.4)
C2:
PF062098=COBRA1=PU(7.6=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGACGCAGATGGTAGG
R:
TTAAGTCCCATGCACCTTGGC
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: