GgaEX0012467 @ galGal4
Exon Skipping
Gene
ENSGALG00000008532 | COBRA1
Description
negative elongation factor B [Source:RefSeq peptide;Acc:NP_001006202]
Coordinates
chr17:1902106-1904869:+
Coord C1 exon
chr17:1902106-1902218
Coord A exon
chr17:1902871-1902973
Coord C2 exon
chr17:1904727-1904869
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACTTTTACCTCTTCTCTCAGGGA
3' ss Score
9.83
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTCACGTGGTGCCTTGATGCCTGCATTCGGGAGAAGTTTGTGGACAACAAGAGAGCTCGGGAATTGCAAGGCTTTCTGGATGGAGTGAAGAAAGGACAAGAGCAAGTTTTGGG
Seq A exon
GGACTTATCGATGATCTTGTGTGATCCCTTTGCCATTAACACCTTAGCCCTGAGTACCATAAGGCACCTGCAGGACCTAGTTGGGCAGGACACCTTACCCAGG
Seq C2 exon
GAAGCTGAGTTGATCACGAAGTTCTTGCCTATGCTGATGTCCTTTGTGGTGGATGATCACACGTTCAATGTAGATCAGAAACTGCCCTCGGAGGAAAAGGGGCCGATTCCCTACCCCAGCACCATTCCTGAGGCTTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(10.7=100)
A:
PF062098=COBRA1=FE(7.2=100)
C2:
PF062098=COBRA1=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATGCCTGCATTCGGGAG
R:
GGTGAAAGCCTCAGGAATGGT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]