BtaEX6047518 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105846141-105846696:-
Coord C1 exon
chr11:105846601-105846696
Coord A exon
chr11:105846321-105846463
Coord C2 exon
chr11:105846141-105846247
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTCTAGGGCCTGCGCCCCAGGAG
3' ss Score
2.12
5' ss Seq
CAAGTACGG
5' ss Score
5.98
Exon sequences
Seq C1 exon
GACAGCCCGGACCTCCTCCTGCTGCTCCGGCTGCTGGCGCTGGGCCAGGGTGCGTGGGACATGATCGACAGCCAGGTCTTCAAGGAGCCCAAGATG
Seq A exon
GAGGTGGAGCTGGTCACCAGGTTCCTGCCCATGCTCATGTCCTTCGTGGTGGACGACCACACCTTCAACGTGGATCAGAAGCTCCCAGCCGAGGAGAAGGCCCCGGTCACGTACCCAAACACGCTGCCGGAGAGCTTCACCAA
Seq C2 exon
GTTCCTGCAGGAGCAGCGCATGGCCTGCGAAGTGGGGCTGTACTACGTGCTGCACATCACCAAGCAGAGGAATAAGAACGCACTGCTGCGCCTGCTGCCGGGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861-'9-16,'9-13,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(6.5=100)
A:
PF062098=COBRA1=FE(9.9=100)
C2:
PF062098=COBRA1=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCCGGACCTCCTC
R:
GCAGCAGTGCGTTCTTATTCC
Band lengths:
185-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]