MmuEX0012053 @ mm9
Exon Skipping
Gene
ENSMUSG00000013465 | Cobra1
Description
cofactor of BRCA1 [Source:MGI Symbol;Acc:MGI:1931035]
Coordinates
chr2:25058661-25059502:-
Coord C1 exon
chr2:25059407-25059502
Coord A exon
chr2:25058868-25059010
Coord C2 exon
chr2:25058661-25058767
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCAGACACTCCTTCTGCCAGGAG
3' ss Score
4.69
5' ss Seq
CAAGTAGGA
5' ss Score
4.46
Exon sequences
Seq C1 exon
GATAGTCCCGACCTCCTCCTACTACTTAGGCTGCTGGCACTGGGCCAAGGTGCATGGGACTTAATAGATAGCCAGGTCTTCAAGGAGCCTAAGATG
Seq A exon
GAGGCAGAGCTCATCACCAAGTTCCTGCCGATGCTCATGTCCCTCGTGGTGGATGACTTCACTTTCAACGTAGATCAGAAGCTTCCAGCTGAGGAGAAAGCCTCAGTCACATACCCCAACACACTTCCTGAGAGTTTCACCAA
Seq C2 exon
GTTTCTGCAGGAGCAGCGCATGGCTTGTGAGGTGGGACTATACTACGTCCTACACATCACCAAGCAGAGAAACAAGAATGCTCTCCTGCGCCTGCTGCCTGGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013465_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=PU(7.6=91.7)
A:
PF062098=COBRA1=FE(15.3=100)
C2:
PF062098=COBRA1=FE(24.3=100),PF069126=DUF1275=PU(17.9=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTCCCGACCTCCTCCTACT
R:
CAAGTCCAGGCAGCAGGC
Band lengths:
202-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: