GgaEX6014842 @ galGal4
Exon Skipping
Gene
ENSGALG00000008532 | COBRA1
Description
negative elongation factor B [Source:RefSeq peptide;Acc:NP_001006202]
Coordinates
chr17:1903941-1905946:+
Coord C1 exon
chr17:1903941-1904036
Coord A exon
chr17:1904727-1904869
Coord C2 exon
chr17:1905840-1905946
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTCCATCCCTCTAAGGAA
3' ss Score
8.3
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAAAGCCCAGATCTGCTGCTGCTCCTTAGGATGCTGTCTTTAGGACAGGGAGCCTGGGACATGATTGACAGTCAAGTCTTCAAGGAACCAAAAATG
Seq A exon
GAAGCTGAGTTGATCACGAAGTTCTTGCCTATGCTGATGTCCTTTGTGGTGGATGATCACACGTTCAATGTAGATCAGAAACTGCCCTCGGAGGAAAAGGGGCCGATTCCCTACCCCAGCACCATTCCTGAGGCTTTCACCAA
Seq C2 exon
ATTCTTGCAGGAGAACAGAATAGCTTGTGAGATTGGGCTATACTATATCCTTCACATAACTAAACAGAGGAACAAGAATGCTTTCCTCAGACTCCTGCCAGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'14-17,'14-15,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(6.6=100)
A:
PF062098=COBRA1=FE(10.0=100)
C2:
PF062098=COBRA1=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCCAGATCTGCTGCTG
R:
TAGTGCTGGCAGGAGTCTGAG
Band lengths:
202-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]