BtaEX6047539 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105884929-105885475:-
Coord C1 exon
chr11:105885368-105885475
Coord A exon
chr11:105885152-105885266
Coord C2 exon
chr11:105884929-105885075
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCCTACTGTCCCCTCCCCAGGCC
3' ss Score
10.25
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
GTGCTGTGCGACTTCCCCCACACAGCTGCTGCTGTCCCCCCAGACTACCTGCTGGACCTGCTGCCCCTGATCCGGCCCCGGGCCTTCTCCATCGCCTCCTCTCTGCGG
Seq A exon
GCCCACCCCTCGCGGCTGCAGATCCTGGTGGCCGTGGTGCAGTACCAGACCCGCCTCCGGGAGCCCCGCCGTGGCCTCTGCTCCAGCTGGCTGGCGTCCCTGGACCCTGCGCAAG
Seq C2 exon
GACCTGTCCGGGTGCCCCTGTGGGTGCGGTCTGGGGGCCTGACATTCCCAAAGACGCCAGATGTACCTGTGATCATGGTGGGGCCCGGCACCGGCGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGAGTGGCCCAGGGCGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'14-19,'14-17,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
PF0066715=FAD_binding_1=PD(13.1=74.4)
C2:
PF0017516=NAD_binding_1=PU(22.4=48.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTGCGACTTCCCC
R:
GGCCACTCGCTCCTGGAT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]