MmuEX0031233 @ mm9
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25103480-25104532:-
Coord C1 exon
chr2:25104425-25104532
Coord A exon
chr2:25104152-25104266
Coord C2 exon
chr2:25103480-25104005
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGCCATCACTGTGTCCATAGGCT
3' ss Score
9.41
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGCTATGCGACTTTCCACATACAGCGGGTGCCATTCCTCCAGACTACCTTTTGGACCTAATCCCTCGGATCCGCCCACGGGCCTTCTCCATTGCTTCCTCCCTACTG
Seq A exon
GCTCATCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCCTCCTGGCTAGCATCCCTGAATCCTGGGCAAG
Seq C2 exon
CAGGACCTGTCCGGGTGCCTCTGTGGGTACGTCCTGGGAGCCTCGTGTTCCCAAAAACACCAGACACACCCATTATCATGGTGGGGGCTGGAACTGGTGTGGCCCCCTTCCGAGCAGCCATTCAGGAACGAGTGGCTCATGGCCAAACTGGTGAGTACTGGAGCTCCAAAGCAGTGTGACCTGACCACTGAGCCTGGTCTAGCTGAATTTCTGCATCCAGACGGGGACCGCCCTATGTACCCCAGGAAACTTCTTGTTCTTTGGCTGCCGCCAGCGGGATCAGGACTTCTACTGGCAGACTGAATGGCAGAAGCTAGAGCAGAAGGGCTGGCTGACCCTGGTTACAGCCTTCTCCCGGGAGCAGGTGAGTATATTCAAGTTAGATAGGACAGGAGTTGGGATGGCTGAAACTTAGCCTCTGACACCTGCAGGAGCAGAAGGTATATGTGCAGCACCGGCTTCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-'18-23,'18-21,20-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
PF0066715=FAD_binding_1=PD(13.1=74.4)
C2:
PF0017516=NAD_binding_1=WD(100=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCCATTGCTTCCTCC
R:
CCCCGTCTGGATGCAGAAATT
Band lengths:
253-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: