DreEX6011749 @ danRer10
Exon Skipping
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31894756-31896280:+
Coord C1 exon
chr5:31894756-31894863
Coord A exon
chr5:31895886-31896000
Coord C2 exon
chr5:31896134-31896280
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTATTTCTCTCTCAGGAA
3' ss Score
10.25
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTACTTACAGACTTCCCTCATACTACAGCAGAGTTGAGCATTGGCTGCTTGCTGGATCTGTTTCCAGAAATTCAGCCTCGCTCCTTCTCTATTGCTTCTTCACTTTTG
Seq A exon
GAACACCCTAATCGTATCCAGATCTTGCTTGCTGTGGTGAAGTATAAAACTATGCTCGTAAAGCCACGCAAAGGTCTCTGCTCTTCTTGGCTGGCGTCTCTGGACCCGTCTAAAG
Seq C2 exon
GAGATGTTTACGTACCACTGTGGGTGAAGAAAGGCAGTTTAAAATTCCCACAGGACCCAGAAAGCCCTGTGATCATGGTGGGACCAGGAACTGGAGTGGCTCCCTTCAGATCTGCCATACAGGAGAGGGTTGCTCAGGGGAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429-'16-13,'16-12,17-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.9=100)
A:
PF0066715=FAD_binding_1=PD(13.2=74.4)
C2:
PF0017516=NAD_binding_1=PU(22.4=48.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTTCCCTCATACTACAGCA
R:
ATCTTCCCCTGAGCAACCCTC
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]