BtaEX6047580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106159467-106160566:-
Coord C1 exon
chr11:106160391-106160566
Coord A exon
chr11:106159902-106160074
Coord C2 exon
chr11:106159467-106159660
Length
173 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCCTCCGTCGGCAGATG
3' ss Score
10.34
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTACATCATGACCAGTGAGTTCACGCTGGAGCCCACAGCCAAGTTCTTCAAGGAGCATGACTTTTTCCACTTGGATCCCAACAACGTGATCATGTTTGAACAGCGCATGCTGCCTGCTGTGTCCTTCGATGGCAGGGCCATCCTGGAGAGGAAAGACAAGGTCGCCATGGCACCAG
Seq A exon
ATGGCAATGGGGGCCTGTACAGCGCGCTGGAGGACCACCAGATCCTAGAGGACATGGAGCGGCGAGGAGTGGAGTTCGTGCACGTGTACTGTGTGGACAACATCCTGGTGCGGCTGGCCGACCCGCTCTTCATAGGCTTCTGCGTGCTGCGGGGCGCCGACTGTGGAGCCAAG
Seq C2 exon
GTGGTGGAGAAGGCGTACCCTGAGGAGCCAGTGGGCGTGGTGTGCCAGGTGGACGGCGTCCCCCAGGTGGTGGAGTACAGCGAGATCAGCCCCGAGGTGGCGCAGCTGCGCGCGCCAGGTGGGGGCCTGCTGTACAACGCAGGCAACATCTGCAACCACTTCTTCACCCGAGACTTCCTCCGGACGGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054-'3-5,'3-2,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.7=100)
A:
PF0170413=UDPGP=FE(15.2=100)
C2:
PF0170413=UDPGP=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTTGAACAGCGCATGC
R:
GGGTGAAGAAGTGGTTGCAGA
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]