MmuEX6099487 @ mm9
Exon Skipping
Gene
ENSMUSG00000026956 | Uap1l1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:MGI Symbol;Acc:MGI:2443318]
Coordinates
chr2:25219326-25220207:-
Coord C1 exon
chr2:25220032-25220207
Coord A exon
chr2:25219621-25219793
Coord C2 exon
chr2:25219326-25219519
Length
173 bp
Sequences
Splice sites
3' ss Seq
TACTCCTTTCTCCTTTATAGATG
3' ss Score
9.82
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTACATCATGACCAGTGAGTTTACCCTGGGACCCACAATCAAGTTCTTCAAGGAGCATGACTTCTTCCACCTGGACCCCACTAACGTAGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
Seq A exon
ATGGCAACGGGGGTTTGTACTGTGCACTGGCTGACCACCAGATCCTGGAGGACATGAAGCAGCGGGGTGTGGAGTTTGTGCATGTGTACTGCGTAGACAACATCTTGGTGCGGCTGGCTGACCCAGTCTTCATTGGCTTCTGTGTGCTTCAGGGAGCAGACTGTGGTGCTAAG
Seq C2 exon
GTGGTGGAGAAAGCATACCCTGAGGAGCCAGTGGGTGTGGTGTGCCAGGTGGATGGTGTCCCCCAGGTGGTGGAATACAGCGAGATCAGCCCTGAGATTGCTGGGCAGCTCGGGGCTGATGGAGGCTTGCTCTACAACGCAGGCAACATCTGCAACCATTTCTTCACCAGAGGCTTCCTGGATGTGGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026956-'3-5,'3-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.2=100)
A:
PF0170413=UDPGP=FE(14.7=100)
C2:
PF0170413=UDPGP=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTACCCTGGGACCCACAA
R:
AATCTCAGGGCTGATCTCGCT
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: