RnoEX0095568 @ rn6
Exon Skipping
Gene
ENSRNOG00000012960 | Uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:RGD Symbol;Acc:1310630]
Coordinates
chr3:2582634-2583501:-
Coord C1 exon
chr3:2583326-2583501
Coord A exon
chr3:2582923-2583095
Coord C2 exon
chr3:2582634-2582827
Length
173 bp
Sequences
Splice sites
3' ss Seq
CCATTCCTTCTCCTCTGTAGATG
3' ss Score
9.68
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTACATCATGACCAGTGAGTTTACACTAGGACCCACAATCAAGTTCTTCAAGGAGCACGACTTCTTTCACCTAGACCCCGCTAACGTGGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
Seq A exon
ATGGTAATGGAGGCCTGTACTGTGCACTGGCTGACCACCAGATCCTGGAGGACATGGAGCAGCGGGGTGTGGAGTTTGTGCATGTGTACTGTGTCGACAACATCTTGGTGCGGTTGGCTGACCCAGCCTTCATTGGCTTCTGTGTGCTTCAGGGAGCAGACTGTGGTGCAAAG
Seq C2 exon
GTCGTGGAGAAAGCGTACCCAGAAGAGCCAGTGGGTGTGGTGTGCCAGGTGGACGGTGTCCCGCAGGTGGTTGAATACAGCGAGATCAGCCCTGAGATTGCTAGGCAGTGTGGGGCTGATGGTGGCTTGCTCTACAACGCAGGCAACATCTGCAACCATTTCTTTACCAGAGGCTTCCTGGATATGGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012960-'4-8,'4-6,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.5=100)
A:
PF0170413=UDPGP=FE(15.0=100)
C2:
PF0170413=UDPGP=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTCACCTAGACCCCGCT
R:
CGTTGTAGAGCAAGCCACCAT
Band lengths:
254-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]