BtaEX6047695 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106370692-106371640:-
Coord C1 exon
chr11:106371519-106371640
Coord A exon
chr11:106371033-106371110
Coord C2 exon
chr11:106370692-106370859
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCACCGCCACCGCTCCGCAGTAC
3' ss Score
5.28
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGCAATGTCGGGCGCTGCAGATCCAGTCCGTGAAGGAGAAGACAGTCAAGAACAAGGCCACGCTGGCTCTCCTGCGCAGCAACATCCGCCGCAGGTCCCAGGAGTGGGCTTTGGCCAAGAAG
Seq A exon
TACGACCAGTGGGCCATCTCCAGGGCCTGTGGGAAGGACGTGCCCATGAGGCTGGCCAACAGCCGCTGCACCATGGAG
Seq C2 exon
GTGGCGCGGGAGAAGCTGCGCAAGTATGTTTTCGACCGCGTGAACGTGCACAACGTGCTGATCCACTTGGTGCGGCGGCGCGGGCGGAAGCTGGAGAGTATGCAGCTGGAGCTGGCCGGCCTGAAGAGCCAGCCGGACGCCACCAAGGAAGAACTGCGCCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF053358=DUF745=PU(15.7=32.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGATCCAGTCCGTGAAG
R:
CCAAGTGGATCAGCACGTTGT
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]