MmuEX6099598 @ mm9
Exon Skipping
Gene
ENSMUSG00000026940 | 4921530D09Rik
Description
RIKEN cDNA 4921530D09 gene [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25471665-25472627:-
Coord C1 exon
chr2:25472506-25472627
Coord A exon
chr2:25472052-25472129
Coord C2 exon
chr2:25471665-25471832
Length
78 bp
Sequences
Splice sites
3' ss Seq
CAGCCGCCGCCGCTCCACAGCAT
3' ss Score
4.65
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACAATGTCGGGCACTCCAGATCCAGGGTGTGAAGGAGAAGACAGCACAGAACAAAGCTACAATGGGAATCCTGCGCAGCAACCTCCGCCGAGGAGCCCAAGACTGGGCTTTGGCTAAGAAG
Seq A exon
CATGATCAATGGACCATCTCCAAGGCCTGCGGAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAG
Seq C2 exon
GTGGCTCGGGAGAAGCTGCGCAAGTACGTCTTTGACCGTGTGAATACACACAACATACTGATCCACCTGGTTCGGCGACGCGGACAGAAGTTGGAGAGCTTGCAGCTGGAGCTGGCCAGCTTACGGAACCAACCTGATGCTACTAAGGACGAACTGCGGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGGGAATCCTGCGCAG
R:
GCTGCAAGCTCTCCAACTTCT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: