GgaEX7009907 @ galGal4
Exon Skipping
Gene
ENSGALG00000001095 | CCDC183
Description
coiled-coil domain containing 183 [Source:HGNC Symbol;Acc:HGNC:28236]
Coordinates
chr19:835186-837681:-
Coord C1 exon
chr19:837560-837681
Coord A exon
chr19:837357-837422
Coord C2 exon
chr19:835186-835353
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTCTCCTGCCTGCAGCAT
3' ss Score
10.41
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGCAAGGGAAAAAGTTTTCCAGGCAGTTGTGTGAGGAAAAGCTAAGCCAGAACAGAAATCTGCTTTCCCAGCTGCATGGGATATTGAGGGAGGACATCCACGCGCTGGACGTTGCCCAGAAG
Seq A exon
CATGACCAGCGCATCATCTCTGAGTTTTGCAGAGCGCAGAAGTACTTGTGTGGCAAAACTGTGCAG
Seq C2 exon
GGGGCCCGAGAGAAGCTCCGAAGCAGCATCTTTGACCGGGTGAACACCTGCAATGCACTGCTGCACGAGGTGAGGCAGCGGAGCCAGGCCCGGGATGTGCTGCAGTGGCGGCTGCAGCAGCTGCTGGACATCAGGATCGATGACAAGCAGCACCAGGAGCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001095-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001021=HLH=PD(25.0=19.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAGGCAGTTGTGTGAGG
R:
CAGTGCATTGCAGGTGTTCAC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]