BtaEX6047707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001206 | LCN15
Description
lipocalin 15 [Source:HGNC Symbol;Acc:HGNC:33777]
Coordinates
chr11:106398271-106398819:-
Coord C1 exon
chr11:106398680-106398819
Coord A exon
chr11:106398532-106398602
Coord C2 exon
chr11:106398271-106398381
Length
71 bp
Sequences
Splice sites
3' ss Seq
GCGGGCCGTGCACCCCCCAGGGC
3' ss Score
5.93
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCTCAGGCCTCTGGTACGTGGTCTCCATGGTCTCTGACTGCAAGGTCTTCTTGGGCAAGAAGGACCACCTGCTGATGTCCACCAGGGACATCAAGGCCTCGGCGGGGGGCAACCTCAGCGTCCACATGGAGTTCCCCCG
Seq A exon
GGCGGACGGCTGTAACCAGGCGGATGCGGAGTACCTGAGAGTGGGTGCCCAGGGGCACTTCCGAGTCCCAG
Seq C2 exon
CCTTGGGCTACCTGGACGTGCGCGTGGTGGACACGGACTACAGCTCCTTCGCCGTGGTCTACATCTACAAGGAGCTGGAGGGCGCGCTCAGCACCATGGTGCAGCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001206-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.9=95.7)
A:
PF0006118=Lipocalin=FE(17.0=100)
C2:
PF0006118=Lipocalin=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGTACGTGGTCTCCAT
R:
AAGGAGCTGTAGTCCGTGTCC
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]