GgaEX7009658 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NI28]
Coordinates
chr17:506665-507329:-
Coord C1 exon
chr17:507190-507329
Coord A exon
chr17:506982-507052
Coord C2 exon
chr17:506665-506778
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTCAATTTTCCCCTTCCAGGCC
3' ss Score
11.36
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TTTGCAGGGATGTGGCACATGATGGCTGCTGTTTCCAACTGCCCTGTGTTCCTGGGCATGAAGGACAAGATGACATCCTCTGCCACCGCCGTCAGCTTCACTCCGGAGGGACACATGACCATGGAGACGGTTATCCCGCT
Seq A exon
GCCAGAAGAATGCAAAAAGATTATGATGCTGTTCCAGCAAAGTGGGCAGGCAGGGCACTACATTGGCACAG
Seq C2 exon
AAAAGGGAGAGAAGAGGGATCTGCGCGTGATGGACACAGACTACGAGCACTACGCCATCGTGTACTCCCAGCAGAAAGACAGCCAGGAACCCAGCACCATGCTGCAGCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009019-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.205
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.7=95.7)
A:
PF0006118=Lipocalin=FE(16.9=100)
C2:
PF0006118=Lipocalin=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTCCAACTGCCCTGTGT
R:
ATGGCGTAGTGCTCGTAGTCT
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]