HsaEX0035516 @ hg38
Exon Skipping
Gene
ENSG00000177984 | LCN15
Description
lipocalin 15 [Source:HGNC Symbol;Acc:HGNC:33777]
Coordinates
chr9:136763357-136763965:-
Coord C1 exon
chr9:136763870-136763965
Coord A exon
chr9:136763713-136763783
Coord C2 exon
chr9:136763357-136763467
Length
71 bp
Sequences
Splice sites
3' ss Seq
AGCCGGCTGTGCACCCCCAGGGC
3' ss Score
6.87
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGTCTTCCTGGGCAAGAAGGACCACCTGTCCATGTCCACCAGGGCCATCAGGCCCACAGAGGAGGGCGGCCTCCACGTCCACATGGAGTTCCCGGG
Seq A exon
GGCGGACGGCTGTAACCAGGTGGATGCCGAGTACCTGAAGGTGGGCTCCGAGGGACACTTCAGAGTCCCGG
Seq C2 exon
CCTTGGGCTACCTGGACGTGCGCATCGTGGACACAGACTACAGCTCCTTCGCCGTCCTTTACATCTACAAGGAGCTGGAGGGGGCCCTCAGCACCATGGTGCAGCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177984-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.9=95.7)
A:
PF0006118=Lipocalin=FE(17.0=100)
C2:
PF0006118=Lipocalin=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCTGGGCAAGAAGGAC
R:
CCCCTCCAGCTCCTTGTAGAT
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development