BtaEX6053004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014312 | ATL1
Description
Bos taurus atlastin GTPase 1 (ATL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034631]
Coordinates
chr10:43532492-43552348:+
Coord C1 exon
chr10:43532492-43532542
Coord A exon
chr10:43534769-43534825
Coord C2 exon
chr10:43552256-43552348
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGATTTTCCTTGTAGCTT
3' ss Score
9.05
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTATAATTTATCTCAAAATGTCCAAGAGGATGATCTTCAGCACCTTCAG
Seq A exon
CTTTTCACTGAATATGGCAGGCTGGCAATGGAAGAAACATTTCTGAAGCCATTTCAG
Seq C2 exon
AGTCTGATATTTCTCGTTCGAGACTGGAGCTTCCCATACGAATTTTCATATGGATCTGACGGTGGCTCCAAATTCTTGGAGAAACGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014312-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
PF0226314=GBP=FE(6.6=100)
C2:
PF0226314=GBP=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTATCTCAAAATGTCCAAGAGGA
R:
CTTGAGGCGTTTCTCCAAGAA
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]