HsaEX6071235 @ hg19
Exon Skipping
Gene
ENSG00000198513 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:11231]
Coordinates
chr14:51060564-51080069:+
Coord C1 exon
chr14:51060564-51060614
Coord A exon
chr14:51062294-51062350
Coord C2 exon
chr14:51079977-51080069
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTGTGTAATTTTTTTTCTAGCTT
3' ss Score
7.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTATATAACTTATCCCAAAATGTCCAGGAGGATGATCTTCAGCACCTCCAG
Seq A exon
CTTTTCACTGAGTATGGCAGACTGGCAATGGAGGAAACATTCCTGAAGCCATTTCAG
Seq C2 exon
AGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATACGAATTTTCATATGGAGCCGATGGTGGTGCCAAATTCTTGGAAAAACGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198513-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(21.3=100)
A:
PF0226314=GBP=FE(24.0=100)
C2:
PF0226314=GBP=PD(10.7=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAAAATGTCCAGGAGGA
R:
CTTGAGGCGTTTTTCCAAGAA
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)