MmuEX6081323 @ mm10
Exon Skipping
Gene
ENSMUSG00000021066 | Atl1
Description
atlastin GTPase 1 [Source:MGI Symbol;Acc:MGI:1921241]
Coordinates
chr12:69934870-69946305:+
Coord C1 exon
chr12:69934870-69934920
Coord A exon
chr12:69937075-69937131
Coord C2 exon
chr12:69946213-69946305
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCTTGGATTCTCCTCCCAGCTT
3' ss Score
6.06
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCTACAACTTGTCCCAGAATGTCCAGGAGGATGATCTCCAGCACCTGCAG
Seq A exon
CTTTTCACTGAGTATGGCAGGTTGGCAATGGAAGAAACATTCCTGAAGCCTTTTCAG
Seq C2 exon
AGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATACGAATTTTCATATGGAGCTGATGGTGGCGCCAAGTTCTTGGAAAAACGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021066-'19-10,'19-9,20-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
PF0226314=GBP=FE(6.6=100)
C2:
PF0226314=GBP=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCAGAATGTCCAGGAGG
R:
TGAGGCGTTTTTCCAAGAACT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types