BtaEX6053525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53800292-53804830:+
Coord C1 exon
chr10:53800292-53800354
Coord A exon
chr10:53804525-53804643
Coord C2 exon
chr10:53804794-53804830
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTTGTTTTTTATAGGGG
3' ss Score
10.13
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTTCATAGTAATCGTCCAAGTAAAAGGTTTTGTATCTTTAAGAAGTATTCAGAAGATCTCAG
Seq A exon
GGGCATTACTCTAGTGTGCCTTAATTGTGACTTCCTAACTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATGAAACTCATGCTTGTCAAGTTGTAATAGAGAAAG
Seq C2 exon
TTTCTGTTTGTATCCCAACTTCTGAACATCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486-'32-31,'32-29,33-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATAGTAATCGTCCAAGTAAAAGG
R:
TCAGAAAGATGTTCAGAAGTTGGGA
Band lengths:
98-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]