GgaEX1003109 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7118615-7137592:+
Coord C1 exon
chr10:7118615-7118677
Coord A exon
chr10:7119169-7119287
Coord C2 exon
chr10:7133712-7137592
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTCTCTCCTCTAGAGG
3' ss Score
11.18
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTTCACAGTGCTCGTCCAAGTAAAAGATTTTGGATATACAAGAAGCATTCAGAAGATCTAAG
Seq A exon
AGGTGTGACTGTAGTATGTCTTAACTGTGATTTTCTGACTGATGGTTCTGGCTTAGATAGGATGGCCACACATCTGAGTGAAAGCCATACTCATGCTTGTCAAGTTATTATAGAGAATG
Seq C2 exon
CAAACAGGGGCTTGATTCTTCAGAGGAAACAAAAGAAGGCAATAGAAACCAAAATGAAGTTGCATCAGTTGAAAAGAATGAAGAAAACTCATCATTGTCAGACACAGAAAATGTTCCCAATTTGGAACTCCCTGATAACAGCACGAAGAAATCTTTGCATGGGAAAGGAACACGTTGTGATTCAGATCATCACAAACAATTAGTAGGAGAGAAACAAAAATGTATTCATGGAGAAAGTGAGTTGAAAACTTGCCAAAGTTCAGATTATGTTGTCTTGACTGATCAGACTAAAGTGCAAAACTTGGATAAAACTACACTTTCAGCAATGAATGCAAGGGACTTAAAGCTAACTTTGGGTGAAGATGTTAGTTTTGAGCAGTTCTTGCGAAAAAGAAATGAACCTGAATCAGTTAATTCAGACATGAGTGAACAAGGCAGTATTCATTTGGAGCCTTTGACTCCGTCAGAGGTACTAGAGCATGAAGCAACTGAAATTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_MULTIEX1-12/16=11-16
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACAGTGCTCGTCCAAGT
R:
TCACAACGTGTTCCTTTCCCA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]