DreEX6007495 @ danRer10
Exon Skipping
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52469101-52472821:+
Coord C1 exon
chr7:52469101-52469163
Coord A exon
chr7:52472576-52472694
Coord C2 exon
chr7:52472794-52472821
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTTATTAAAGGAG
3' ss Score
7.32
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTTTCACCAGAATTCTACTAAAGTGCGGGTTGGCAAAGTGAAAAATCCTCCACGTGGTGTGCG
Seq A exon
GAGTCTAACACTTGTGTGTCTCAAGTGTGACTTTCTGGCAGACGCTTCTGGTGCAGATAAGATGACTGAACATTTGCTCAGCAGGTCGAACCACTCCTGCCAGGTCATCATGGAGCCAG
Seq C2 exon
TTTCCAATGGAGGACCAGAAACGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-'23-27,'23-25,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.390 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACCAGAATTCTACTAAAGTGCG
R:
CTGTTCGTTTCTGGTCCTCCA
Band lengths:
90-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]